Data preparation

Download sample datasets

sample datasets - md5: 6601c8f3c4c827d2a30fcb5c6d0dee7c (Species: Homo sapiens.)

wget

wget -c -O demo3k.tar "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/demodata/demo3k.tar"
# decompress
tar xf demo3k.tar

curl

curl -C - -o demo3k.tar "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/demodata/demo3k.tar"
# decompress
tar xf demo3k.tar

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Download and build reference genome

Download-human-reference-GRCh38 - md5: 5473213ae62ebf35326a85c8fba6cc42

wget

mkdir -p /demo/refdata/
cd /demo/refdata/
wget -c -O GRCh38.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/reference/GRCh38.tar.gz"
# decompress
tar -zxvf GRCh38.tar.gz

curl

mkdir -p /demo/refdata/
cd /demo/refdata/
curl -C - -o GRCh38.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/reference/GRCh38.tar.gz"
# decompress
tar -zxvf GRCh38.tar.gz

The assembly of the reference genome refers to How to build reference genome?