Output descriptions
Here’s the output directory structure: each line represents a file or folder, indicated by “├──”.
outs/
├── airr_rearrangement.csv AIRR format result file
├── all_contig_annotations.csv Annotation results for all assembled contigs
├── all_contig.fasta FASTA sequences of all assembled contigs
├── clonotypes.csv Clonotype clustering information
├── consensus_annotations.csv Consensus sequence annotations per clonotype chain
├── consensus.fasta Consensus sequences in FASTA format per clonotype chain
├── filtered_contig_annotations.csv Annotation results for filtered contigs
├── filtered_contig_igblast.fasta FASTA sequences of filtered assembled contigs
├── metrics_summary.csv Quality control metrics summary file
└── report.html Analysis report