Output descriptions

Here’s the output directory structure: each line represents a file or folder, indicated by “├──”.

outs/
├── airr_rearrangement.csv             AIRR format result file
├── all_contig_annotations.csv         Annotation results for all assembled contigs
├── all_contig.fasta                   FASTA sequences of all assembled contigs
├── clonotypes.csv                     Clonotype clustering information
├── consensus_annotations.csv          Consensus sequence annotations per clonotype chain
├── consensus.fasta                    Consensus sequences in FASTA format per clonotype chain
├── filtered_contig_annotations.csv    Annotation results for filtered contigs
├── filtered_contig_igblast.fasta      FASTA sequences of filtered assembled contigs
├── metrics_summary.csv                Quality control metrics summary file
└── report.html                        Analysis report