vdj module

• Data preparation
  • Download sample datasets
• Run SeekSoulTools
  • Run tests
  • Parameter descriptions
• Output descriptions
• Algorithms Overview
  • barcode/UMI extraction
    • Structure design and description
    • Workflow
      • Barcode and linker correction
    • Adaptors and polyA sequence trimming
  • Sequence Assembly
  • Sequence filtering
  • VDJ annotation
  • Cell identification
  • Clonotype calculation