数据准备

测试数据下载

测试数据 - md5: e63635791820f275b95f42aa6e992845(物种:人)

wget -c -O cellline.tar "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/demodata/cellline.tar"
# decompress
tar xf cellline.tar
curl -C - -o cellline.tar "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/demodata/cellline.tar"
# decompress
tar xf cellline.tar

参考基因组下载和构建

Download-human-reference-GRCh38 - md5: 5473213ae62ebf35326a85c8fba6cc42

Download-hg38-rRNA - md5: 9949f6cea38633daf1d5bf1a2b976488

wget -c -O GRCh38.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/reference/GRCh38.tar.gz"
# decompress
tar -zxvf GRCh38.tar.gz

wget -c -O hg38_rRNA.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/reference/hg38_rRNA.tar.gz"
tar -zxvf hg38_rRNA.tar.gz
curl -C - -o GRCh38.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/reference/GRCh38.tar.gz"
# decompress
tar -zxvf GRCh38.tar.gz

curl -C - -o hg38_rRNA.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/data/reference/hg38_rRNA.tar.gz"
tar -zxvf hg38_rRNA.tar.gz

参考基因组的构建可以参考如何构建参考基因组?