Output descriptions

Here’s the output directory structure: each line represents a file or folder, indicated by “├──”.

.
├── Analysis
│   ├── dandelion
│   ├── qc
│   ├── summary.json
│   └── trust4
└── Outs
    ├── demo_TCR_airr_rearrangement.tsv               AIRR format result file
    ├── demo_TCR_filtered_contig_annotations.tsv      Annotation results for filtered contigs
    ├── demo_TCR_cell_barcodes.json                   All barcode for filtered contigs
    ├── demo_TCR_clonotypes.tsv                       Clonotype clustering information
    ├── demo_TCR_consensus.fasta                      Consensus sequences in FASTA format per clonotype chain
    ├── demo_TCR_filtered_contig.fasta                FASTA sequences of filtered assembled contigs
    ├── demo_TCR_report.html                          Analysis report
    └── metrics_summary.csv                           Quality control metrics summary file